API for anilchalisey/parseR
Pipeline for Analysis of RNA-seq in R

Global functions
aggregate_fqc Man page Source code
align_rna Man page Source code
annotation Man page
check_cmd Source code
cmd Source code
count_reads Man page Source code
create_contrast Man page Source code
create_design Man page Source code
create_dir Source code
create_folders Source code
create_fqreport Man page Source code
create_hmp Man page Source code
create_maplot Man page Source code
create_mds Man page Source code
create_pca Man page Source code
create_se Man page Source code
deseq2_norm Man page Source code
deseq2_pipe Man page Source code
edger_norm Man page Source code
edger_pipe Man page Source code
extract_common Source code
extract_numbers Source code
get_ext Source code
get_problems Source code
get_status Source code
grid_arrange_shared_legend Source code
homer_denovo Man page Source code
homer_known Man page Source code
limma_pipe Man page Source code
load_samples Man page Source code
make_bigwig Man page Source code
make_venn Man page Source code
module_fqc Man page Source code
onLoad Source code
plot_ad Source code
plot_bq Source code
plot_bstats Source code
plot_dl Source code
plot_fqc Man page Source code
plot_gc Source code
plot_kmer Source code
plot_msum Source code
plot_nc Source code
plot_os Source code
plot_sc Source code
plot_sq Source code
process_counts Man page Source code
read_fastqc Man page Source code
read_multifastqc Man page Source code
remove_ext Source code
remove_trail Source code
run_deseq2 Man page Source code
run_diff Man page Source code
run_edger Man page Source code
run_fastqc Man page Source code
run_goseq Man page Source code
run_goseqmsigdb Man page Source code
run_hisat2 Man page Source code
run_homer Man page Source code
run_limma Man page Source code
run_sambambadup Man page Source code
run_samflagstat Man page Source code
run_samindex Man page Source code
run_samsort Man page Source code
run_samview Man page Source code
sin Source code
snotin Source code
stats_fqc Man page Source code
theme_Publication Source code
valid_modules Source code
venn2 Source code
venn3 Source code
anilchalisey/parseR documentation built on June 24, 2017, 12:22 a.m.