API for anilchalisey/parseR
Pipeline for Analysis of RNA-seq in R

Global functions
.check_cmd	Source code
.cmd	Source code
.create_dir	Source code
.create_folders	Source code
.extract_common	Source code
.extract_numbers	Source code
.get_ext	Source code
.get_problems	Source code
.get_status	Source code
.grid_arrange_shared_legend	Source code
.isin	Source code
.isnotin	Source code
.onLoad	Source code
.plot_ad	Source code
.plot_bq	Source code
.plot_bstats	Source code
.plot_dl	Source code
.plot_gc	Source code
.plot_kmer	Source code
.plot_msum	Source code
.plot_nc	Source code
.plot_os	Source code
.plot_sc	Source code
.plot_sq	Source code
.remove_ext	Source code
.remove_trail	Source code
.theme_Publication	Source code
.valid_modules	Source code
.venn2	Source code
.venn3	Source code
aggregate_fqc	Man page Source code
align_rna	Man page Source code
annotation	Man page
count_reads	Man page Source code
create_contrast	Man page Source code
create_design	Man page Source code
create_fqreport	Man page Source code
create_hmp	Man page Source code
create_maplot	Man page Source code
create_mds	Man page Source code
create_pca	Man page Source code
create_se	Man page Source code
deseq2_norm	Man page Source code
deseq2_pipe	Man page Source code
edger_norm	Man page Source code
edger_pipe	Man page Source code
homer_denovo	Man page Source code
homer_known	Man page Source code
limma_pipe	Man page Source code
load_samples	Man page Source code
make_bigwig	Man page Source code
make_venn	Man page Source code
module_fqc	Man page Source code
plot_fqc	Man page Source code
process_counts	Man page Source code
read_fastqc	Man page Source code
read_multifastqc	Man page Source code
run_deseq2	Man page Source code
run_diff	Man page Source code
run_edger	Man page Source code
run_fastqc	Man page Source code
run_goseq	Man page Source code
run_goseqmsigdb	Man page Source code
run_hisat2	Man page Source code
run_homer	Man page Source code
run_limma	Man page Source code
run_sambambadup	Man page Source code
run_samflagstat	Man page Source code
run_samindex	Man page Source code
run_samsort	Man page Source code
run_samview	Man page Source code
stats_fqc	Man page Source code