create_mds: Create multi-dimensional scaling plot from DGE object

In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Description

Function to create a MDS plot from a DGE object.

Usage

create_mds(dge = dge, main = "", dim.plot = c(1, 2), n = min(500,
  nrow(dge$counts)))

Arguments

dge	DGE object produced by DGEList.
main	Plot title.
dim.plot	Dimensions to plot - default are dimensions 1 and 2.
n	Number of pairwise genes to consider when plotting MDS. Default is 500.

Value

MDS plot.

Examples

## Not run: 
create_mds(dge)

## End(Not run)

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.