Description Usage Arguments Value Examples
Function to run DESeq2 analysis on a DDS object and to extract the desired contrasts.
1 | run_deseq2(dds = dds, p.value = 0.05, adjust.method = "BH")
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dds |
DESeq2 dds object created by
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p.value |
p-value for determining signficance for differential expression. |
adjust.method |
method for p-value correction for multiple testing |
A DDS object in which has undergone dispersion estimates and model fitting.
1 2 3 4 | ## Not run:
dds <- run_deseq2(dds = ddsMat)
## End(Not run)
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