Description Usage Arguments Value Examples
Function to run edgeR-QLF on a DGE object.
1 2 | run_edger(dge = dge, design = design, contrast = contrast.matrix,
adjust.method = "BH", p.value = 0.05)
|
dge |
DGE object produced by |
design |
Design matrix produced by |
contrast |
Contrast matrix produced by |
adjust.method |
Method to be used for adjustment of nominal p-values. May be one of "BH", "bonferroni", "holm", "hochberg", "hommel", "BY". |
p.value |
Value between 0 and 1. Adjusted p-value for the differential expression analysis. |
Results of edgeR analysis
1 2 3 4 | ## Not run:
qlf <- run_edger(dge, design, contrast.matrix)
## End(Not run)
|
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