Files in anilchalisey/parseR
Pipeline for Analysis of RNA-seq in R
.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
R/aggregate_fqc.R
R/align_rna.R
R/count_reads.R
R/create_MAplot.R
R/create_contrasts.R
R/create_fqreport.R
R/create_hmp.R
R/create_mds.R
R/create_pca.R
R/create_se.R
R/deseq2_norm.R
R/deseq2_pipe.R
R/edger_norm.R
R/edger_pipe.R
R/limma_pipe.R
R/load_samples.R
R/make_bigwig.R
R/make_venn.R
R/parse_motifs.R
R/plot_fastqc.R
R/process_counts.R
R/read_fastqc.R
R/read_multifastqc.R
R/run_deseq2.R
R/run_diff.R
R/run_edger.R
R/run_fastqc.R
R/run_goseq.R
R/run_hisat2.R
R/run_homer.R
R/run_limma.R
R/run_sambamba.R
R/run_samtools.R
R/sysdata.rda
R/utilities.R
R/zzz.R
README.md
data/annotation.rda
inst/extdata/multi_sample.Rmd
inst/extdata/single_sample.Rmd
man/aggregate_fqc.Rd
man/align_rna.Rd
man/annotation.Rd
man/count_reads.Rd
man/create_contrast.Rd
man/create_fqreport.Rd
man/create_hmp.Rd
man/create_maplot.Rd
man/create_mds.Rd
man/create_pca.Rd
man/create_se.Rd
man/deseq2_norm.Rd
man/deseq2_pipe.Rd
man/edger_norm.Rd
man/edger_pipe.Rd
man/homer_known.Rd
man/limma_pipe.Rd
man/load_samples.Rd
man/make_bigwig.Rd
man/make_venn.Rd
man/plot_fqc.Rd
man/process_counts.Rd
man/read_fastqc.Rd
man/read_multifastqc.Rd
man/run_deseq2.Rd
man/run_diff.Rd
man/run_edger.Rd
man/run_fastqc.Rd
man/run_goseq.Rd
man/run_hisat2.Rd
man/run_homer.Rd
man/run_limma.Rd
man/run_sambambadup.Rd
man/run_samsort.Rd
parseR.Rproj
vignettes/USERGUIDE.Rmd
vignettes/WSL_SETUP.Rmd
