edger_norm: Count normalisation using edgeR
In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Function to perform count normalisation prior to differential analysis, with generation of before and after plots.

1	edger_norm(dge = NULL, norm.method = "TMM")

`dge`	DGE object.
`norm.method`	Normalisation method to use - may be "TMM", "RLE", "upperquartile" or "none".

Normalised DGE object.

## Not run: 
dge <- edger_norm(dge, norm.method = "TMM")

## End(Not run)

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.

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