create_hmp: Heatmap of most differential genes.

In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Description

Heatmap showing centred and normalised expression across each sample for the most differentially-expressed genes in each contrast.

Usage

create_hmp(results, n = 100, main = "Heatmap of top DEGs",
  show_row_names = FALSE)

Arguments

results	Results slot from object created by edger_pipe, limma_pipe, or deseq2_pipe.
n	Topmost number of genes to plot.
main	Title of plot.
show_row_names	Boolean indicating whether to show gene names in the heatmap.

Value

Heatmap in PNG format.

Examples

## Not run: 
load(system.file("data", "er.rda", package = "dealr"))
create_hmp(er$results)

## End(Not run)

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.