create_fqreport: Create a QC report

In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Description

Create an HTML file containing FastQC reports of one or multiple files. Inputs can be either a directory containing multiple FastQC zipped files or a single FastQC file.

Usage

create_fqreport(fqc = NULL, outdir = ".", experiment = NULL,
  author = NULL, preview = TRUE)

Arguments

fqc	Either a single zipped FASTQC file or a directory containing such files.
outdir	The directory to which to write out the results. The default is the current working directory.
experiment	Brief experiment description
author	Author name
preview	Logical indicating whether to open the HTML file after it is created.

Value

An HTML file (or files) containing FASTQC reports.

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.