make_bigwig: Create bigwig files from BAM

In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Description

Script to generate bigwig files with the option for normalisation from a BAM file. Currently will only work with paired end BAM files.

Usage

make_bigwig(bamfile = NULL, scale = 2e+07)

Arguments

bamfile	Path to a BAM file.
scale	The number of reads to scale to. If NULL no scaling performed.

Value

Coverage file in bigwig format.

Examples

## Not run: 
make_bigwig(bamfile = "HB1_sample.bam", scale = 20000000)

## End(Not run)

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.