deseq2_norm: Count normalisation using DESeq2
In anilchalisey/parseR: Pipeline for Analysis of RNA-seq in R

Function to show the effect of the count normalisation that will be performed as part of the DESeq2 analysis.

1	deseq2_norm(dds = dds)

dds

DESeq2 dds object created by DESeqDataSetFromMatrix.

Boxplots showing the effect of normalisation in PNG and PDF format.

## Not run: 
load(system.file("data", "ddsMat.rda", package = "dealr"))
deseq2_norm(dds)

## End(Not run)

anilchalisey/parseR documentation built on May 7, 2019, 7:45 a.m.

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