getSpeciesNodeNumberFromCafe: Extracts the number CAFE assigned the species during its...

View source: R/family_funks.R

getSpeciesNodeNumberFromCafeR Documentation

Extracts the number CAFE assigned the species during its analysis.

Description

Extracts the number CAFE assigned the species during its analysis.

Usage

getSpeciesNodeNumberFromCafe(cafe.id.line, species.name = "chi")

Arguments

cafe.id.line

the string representing the line number three in the cafe result file

species.name

the species name as given in 'cafe.id.line' to extract the CAFE internal number for

Value

The CAFE internal node number representing the species' branch in the phylogeny. Returned as string.


asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.