orthologs: Identifies orthologous gene pairs as genes being...
In asishallab/GeneFamilies: Analyses different properties of gene families
View source: R/ortholog_funks.R
orthologs R Documentation
Identifies orthologous gene pairs as genes being significantly similar in
sequence and belonging to different species.
Description
Identifies orthologous gene pairs as genes being significantly similar in
sequence and belonging to different species.
Usage
orthologs(homologs.tbl, gene.regex.1, gene.regex.2)
Arguments
homologs.tbl
a data.frame of two character columns - possibly the
result obtained from invoking homologous(...)
gene.regex.1
a string encoding a PERL regular expression to match
gene identifiers to species A
gene.regex.2
a string encoding a PERL regular expression to match
gene identifiers to species B
Value
A subset of argument 'homologs.tbl' containg the orthologous gene
pairs. Note that if pair (A,B) is contained the reciprocal pair (B,A) is,
too. This should ease lookup.
asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.
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View source: R/ortholog_funks.R
| orthologs | R Documentation |
Identifies orthologous gene pairs as genes being significantly similar in sequence and belonging to different species.
Description
Identifies orthologous gene pairs as genes being significantly similar in sequence and belonging to different species.
Usage
orthologs(homologs.tbl, gene.regex.1, gene.regex.2)
Arguments
homologs.tbl |
a data.frame of two character columns - possibly the result obtained from invoking homologous(...) |
gene.regex.1 |
a string encoding a PERL regular expression to match gene identifiers to species A |
gene.regex.2 |
a string encoding a PERL regular expression to match gene identifiers to species B |
Value
A subset of argument 'homologs.tbl' containg the orthologous gene pairs. Note that if pair (A,B) is contained the reciprocal pair (B,A) is, too. This should ease lookup.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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