parseCafeBranchSpecificPValues: Extract the branch specific extension / contraction P-Values...
In asishallab/GeneFamilies: Analyses different properties of gene families
parseCafeBranchSpecificPValues R Documentation
Extract the branch specific extension / contraction P-Values that were
assigned to those branches that lead to the species' tips in the phylogeny.
Description
Extract the branch specific extension / contraction P-Values that were
assigned to those branches that lead to the species' tips in the phylogeny.
Usage
parseCafeBranchSpecificPValues(cafe.br.spec.pvals, spec.pos)
Arguments
cafe.br.spec.pvals
the string parsed out from the CAFE result table
spec.pos
named integer vector holding the positions of the species
specific p-values in 'cafe.br.spec.pvals'. See ./exec/parseCafeResult.R for
more details
Value
A data frame with columns the species and cells their specific
P-Values for expansion or contraction in the respective gene family.
Do not warn about the intent to make a numeric NA from the CAFE '-'
character:
asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.
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| parseCafeBranchSpecificPValues | R Documentation |
Extract the branch specific extension / contraction P-Values that were assigned to those branches that lead to the species' tips in the phylogeny.
Description
Extract the branch specific extension / contraction P-Values that were assigned to those branches that lead to the species' tips in the phylogeny.
Usage
parseCafeBranchSpecificPValues(cafe.br.spec.pvals, spec.pos)
Arguments
cafe.br.spec.pvals |
the string parsed out from the CAFE result table |
spec.pos |
named integer vector holding the positions of the species specific p-values in 'cafe.br.spec.pvals'. See ./exec/parseCafeResult.R for more details |
Value
A data frame with columns the species and cells their specific P-Values for expansion or contraction in the respective gene family. Do not warn about the intent to make a numeric NA from the CAFE '-' character:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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