readMclOutput: Uses Linux's AWK and package data.table to parse the output...

In asishallab/GeneFamilies: Analyses different properties of gene families

Uses Linux's AWK and package data.table to parse the output of MCL into an instance of base::data.frame.

Description

Uses Linux's AWK and package data.table to parse the output of MCL into an instance of base::data.frame.

Usage

readMclOutput(path.2.mcl.out, family.name.prefix = "cluster_")

Arguments

path.2.mcl.out	The valid path to the output file of the mcl program.
family.name.prefix	The prefix used to name gene families (clusters). Default is 'cluster_' resulting in 'cluster_1', 'cluster_2', etc.

Value

A data.frame with two columns: 'Family', and 'Gene' mapping the families to their gene members.

asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.