translate2AASeqs | R Documentation |
Uses the program MACSE to translate the coding sequences to amino acid sequences.
translate2AASeqs(path.2.cds.fasta, macse.call = getOption("macse.call",
paste("java -Xmx600m -jar ", file.path(path.package("GeneFamilies"),
"macse_v1.01b.jar"), " -prog translateNT2AA", sep = "")))
path.2.cds.fasta |
gives the valid file path to the FASTA file holding the coding sequences. |
macse.call |
The call with which to invoke MACSE through the system(...) function. Use option 'macse.call' to modify the default. |
TRUE if and only if no error has occurred.
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