translate2AASeqs: Uses the program MACSE to translate the coding sequences to...

In asishallab/GeneFamilies: Analyses different properties of gene families

Uses the program MACSE to translate the coding sequences to amino acid sequences.

Description

Uses the program MACSE to translate the coding sequences to amino acid sequences.

Usage

translate2AASeqs(path.2.cds.fasta, macse.call = getOption("macse.call",
  paste("java -Xmx600m -jar ", file.path(path.package("GeneFamilies"),
  "macse_v1.01b.jar"), " -prog translateNT2AA", sep = "")))

Arguments

path.2.cds.fasta	gives the valid file path to the FASTA file holding the coding sequences.
macse.call	The call with which to invoke MACSE through the system(...) function. Use option 'macse.call' to modify the default.

Value

TRUE if and only if no error has occurred.

asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.