DMReport: Create an html report of DMRs or blocks

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

Create an html report of DMRs or blocks

Description

Create an html report of significant regions from dmrseq

Usage

DMReport(
  sigRegions = sigRegions,
  regions = regions,
  bs.filtered = bs.filtered,
  coverage = coverage,
  name = "DMReport"
)

Arguments

sigRegions	GRanges object of significant regions (DMRs or blocks) from dmrseq that were annotated by DMRichR::annotateRegions
regions	GRanges object of background regions from dmrseq
bs.filtered	Filtered bsseq object from processBismark()
coverage	Numeric of coverage samples were filtered for
name	Character for html report name

Details

DMReport

Value

Saves an html report of DMRs with genic annotations

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.