DMRichCpG: CpG annotation enrichment testing
In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse
DMRichCpG R Documentation
CpG annotation enrichment testing
Description
Test DMRs for overlaps with CpG annotations (islands, shores, shelves, open sea)
Usage
DMRichCpG(sigRegions = sigRegions, regions = regions, genome = genome)
Arguments
sigRegions
GRanges object of DMRs
regions
GRanges object of background regions
genome
A character vector specifying the genome of interest
c("hg38", "hg19", "mm10", "mm9", "rheMac10", "rheMac8", "rn6", "danRer11",
"galGal6", "bosTau9", "panTro6", "dm6", "susScr11", "canFam3")
Details
DMRichCpG
Value
A tibble with the enrichment results
ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.
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| DMRichCpG | R Documentation |
CpG annotation enrichment testing
Description
Test DMRs for overlaps with CpG annotations (islands, shores, shelves, open sea)
Usage
DMRichCpG(sigRegions = sigRegions, regions = regions, genome = genome)
Arguments
sigRegions |
|
regions |
|
genome |
A character vector specifying the genome of interest c("hg38", "hg19", "mm10", "mm9", "rheMac10", "rheMac8", "rn6", "danRer11", "galGal6", "bosTau9", "panTro6", "dm6", "susScr11", "canFam3") |
Details
DMRichCpG
Value
A tibble with the enrichment results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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