GOfuncR: GOfuncR gene ontology enrichment testing

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

GOfuncR gene ontology enrichment testing

Description

Perform Gene Ontology enrichment analysis of DMRs using GOfuncR.

Usage

GOfuncR(
  sigRegions = sigRegions,
  regions = regions,
  n_randsets = 1000,
  upstream = 5000,
  downstream = 1000,
  annoDb = annoDb,
  TxDb = TxDb,
  ...
)

Arguments

sigRegions	GRanges object of DMRs.
regions	GRanges object of background regions.
n_randsets	Number specifying the number of random sets for calculating the FWER.
upstream	Numeric of how many bases to extend upstream from gene body for mapping DMRs to genes.
downstream	Numeric of how many bases to extend downstream from gene body for mapping DMRs to genes.
annoDb	Character specifying OrgDb annotation package for species of interest.
TxDb	TxDb or EnsDb annotation package for genome of interest.
...	Additional arguments passed onto GOfuncR::go_enrich().

Details

GOfuncR

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.