imprintOverlap: Imprinted gene enrichment testing

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

Imprinted gene enrichment testing

Description

Test DMRs for overlaps with human imprinted genes from https://www.geneimprint.com/site/genes-by-species.Homo+sapiens.imprinted-All

Usage

imprintOverlap(
  sigRegions = sigRegions,
  regions = regions,
  TxDb = TxDb,
  annoDb = annoDb
)

Arguments

sigRegions	GRanges object of DMRs.
regions	GRanges object of background regions.
TxDb	TxDb annotation package for genome of interest.
annoDb	Character specifying OrgDb annotation package for species of interest.

Details

imprintOverlap

Value

A printed statement with the enrichment results.

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.