windows: Extract methylation values from tiled genomic windows
In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse
windows R Documentation
Extract methylation values from tiled genomic windows
Description
Obtain windows of individual smoothed methylation values
Usage
windows(bs.filtered.bsseq = bs.filtered.bsseq, size = 20000, goi = goi)
Arguments
bs.filtered.bsseq
Smoothed bsseq object with a testCovariate in pData
size
The number of bases in the window (default is 2e4, which is 20 Kb)
goi
A BSgenome object of the genome of interest (i.e. "BSgenome.Hsapiens.UCSC.hg38")
Details
windows
Value
A matrix of smoothed individual methylation values
ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.
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| windows | R Documentation |
Extract methylation values from tiled genomic windows
Description
Obtain windows of individual smoothed methylation values
Usage
windows(bs.filtered.bsseq = bs.filtered.bsseq, size = 20000, goi = goi)
Arguments
bs.filtered.bsseq |
Smoothed |
size |
The number of bases in the window (default is 2e4, which is 20 Kb) |
goi |
A |
Details
windows
Value
A matrix of smoothed individual methylation values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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