getCpGs: Obtain CpG island, CpG shore, CpG shelf, and open sea...
In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse
getCpGs R Documentation
Obtain CpG island, CpG shore, CpG shelf, and open sea annotations
Description
Obtain UCSC CpG islands and build CpG shore, CpG shelf, and open sea annotations.
This function is based on annotatr:::build_cpg_annots(); however,
it obtains annotations for all genomes in the UCSC genome browser.
Usage
getCpGs(genome = genome)
Arguments
genome
Character specifying the genome
Details
getCpGs
Value
A GRanges object of CpG island, CpG shore, CpG shelf, and open sea annotations
References
Based on annotatr:::build_cpg_annots(),
see: https://github.com/rcavalcante/annotatr/blob/master/R/build_annotations.R
ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.
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| getCpGs | R Documentation |
Obtain CpG island, CpG shore, CpG shelf, and open sea annotations
Description
Obtain UCSC CpG islands and build CpG shore, CpG shelf, and open sea annotations.
This function is based on annotatr:::build_cpg_annots(); however,
it obtains annotations for all genomes in the UCSC genome browser.
Usage
getCpGs(genome = genome)
Arguments
genome |
Character specifying the genome |
Details
getCpGs
Value
A GRanges object of CpG island, CpG shore, CpG shelf, and open sea annotations
References
Based on annotatr:::build_cpg_annots(),
see: https://github.com/rcavalcante/annotatr/blob/master/R/build_annotations.R
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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