HOMER: Transcription factor motif analysis
In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse
HOMER R Documentation
Transcription factor motif analysis
Description
Run a HOMER known transcription motif analysis for all DMRs,
hypermethylated DMRs, and hypomethylated DMRs. The function requires HOMER's
findMotifsGenome.pl script to be in the path (i.e. module load homer)
and for the genome of interest (see perl /path-to-homer/configureHomer.pl -list)
to be installed through perl /path-to-homer/configureHomer.pl -install human.
Usage
HOMER(genome = genome, cores = cores)
Arguments
genome
Character specifying the genome
cores
Integer specifying the number of cores to use
Details
HOMER
Value
A folder with HOMER results
References
ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.
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| HOMER | R Documentation |
Transcription factor motif analysis
Description
Run a HOMER known transcription motif analysis for all DMRs,
hypermethylated DMRs, and hypomethylated DMRs. The function requires HOMER's
findMotifsGenome.pl script to be in the path (i.e. module load homer)
and for the genome of interest (see perl /path-to-homer/configureHomer.pl -list)
to be installed through perl /path-to-homer/configureHomer.pl -install human.
Usage
HOMER(genome = genome, cores = cores)
Arguments
genome |
Character specifying the genome |
cores |
Integer specifying the number of cores to use |
Details
HOMER
Value
A folder with HOMER results
References
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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