getBackground: bsseq style background regions
In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse
View source: R/helperFunctions.R
getBackground R Documentation
bsseq style background regions
Description
Get background regions from filtered bsseq object based on minCpGs and maxGap
Usage
getBackground(bs = bs.filtered, minNumRegion = 5, maxGap = 1000)
Arguments
bs
bsseq object that has been filtered for coverage and sorted
minNumRegion
Minimum CpGs required for a region. Must be at least 3 CpGs, default is 5 CpGs
maxGap
Maximum distance between CpGs to be included in the same region. Default is 1000 bp
Details
getBackground
Value
Data.frame of background regions with location, number of CpGs, and width
ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.
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View source: R/helperFunctions.R
| getBackground | R Documentation |
bsseq style background regions
Description
Get background regions from filtered bsseq object based on minCpGs and maxGap
Usage
getBackground(bs = bs.filtered, minNumRegion = 5, maxGap = 1000)
Arguments
bs |
bsseq object that has been filtered for coverage and sorted |
minNumRegion |
Minimum CpGs required for a region. Must be at least 3 CpGs, default is 5 CpGs |
maxGap |
Maximum distance between CpGs to be included in the same region. Default is 1000 bp |
Details
getBackground
Value
Data.frame of background regions with location, number of CpGs, and width
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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