slimGO: Slim GO results

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

Slim GO results

Description

Slims top significant Gene Ontology terms from enrichR, rGREAT, and GOfuncR using rrvgo.

Usage

slimGO(
  GO = GO,
  tool = c("enrichR", "rGREAT", "GOfuncR"),
  annoDb = annoDb,
  plots = FALSE,
  threshold = 0.7
)

Arguments

GO	A dataframe or list of dataframes returned from enrichR::enrichr(), rGREAT::getEnrichmentTables(),or GOfuncR::go_enrich().
tool	A character vector of the name of the database (enrichR, rGREAT, or GOfuncR).
annoDb	Character specifying OrgDb annotation package for species of interest.
plots	Logical indicating if scatter and treemap plots should be generated.
threshold	Numeric indicating similarity threshold (0-1) for rrvgo::reduceSimMatrix(). 0.9 is large, 0.7 is medium, 0.5 is small, and 0.4 is tiny. Default is 0.7.

Details

slimGO

Value

A tibble of top distinct and significant GO terms from an enrichR, rGREAT or GOfuncR analysis.

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.