arrayLift: LiftOver Infinium array probe IDs to hg38 coordinates

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

LiftOver Infinium array probe IDs to hg38 coordinates

Description

LiftOver EPIC, 450k, or 27K Infinium array CpG IDs to hg38 coordinates

Usage

arrayLift(probes = probes, array = "EPIC")

Arguments

probes	A dataframe or vector of EPIC, 450K, or 27K CpG IDs
array	A character with array platform ("EPIC", "450K" or "27K")

Details

arrayLift

Value

A GRanges object of hg38 coordinates

References

https://support.bioconductor.org/p/78652/

Examples

## Not run:  
readxl::read_excel("file.xlsx") %>%
  dplyr::select(CpGID) %>% 
  arrayLift("EPIC") %>%
  dplyr::as_tibble() %>%
  dplyr::select(seqnames, start, end) %>% 
  DMRichR::df2bed("file.bed")

## End(Not run)

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.