smoothPheatmap: DMR heatmap

In ben-laufer/DMRichR: Enrich your DMR Analysis with the Tidyverse

DMR heatmap

Description

Plot a heatmap of normalized individual smoothed methylation value z scores for selected regions (i.e. significant DMRs)

Usage

smoothPheatmap(
  bs.filtered.bsseq = bs.filtered.bsseq,
  sigRegions = sigRegions,
  testCovariate = testCovariate,
  ...
)

Arguments

bs.filtered.bsseq	Smoothed bsseq object
sigRegions	GRanges object of regions to plot a heatmap for
testCovariate	The factor tested for differences between groups
...	Additional arguments passed onto pheatmap

Details

smoothPheatmap

Value

Saves a pdf image of the heatmap in the DMR folder

References

https://davetang.org/muse/2018/05/15/making-a-heatmap-in-r-with-the-pheatmap-package/

ben-laufer/DMRichR documentation built on Oct. 1, 2023, 7:25 a.m.