QuantifyTcrClones: Append Clone Properties
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
QuantifyTcrClones R Documentation
Append Clone Properties
Description
A function to append clone properties to a Seurat object
Usage
QuantifyTcrClones(seuratObj, tcrClonesFile, groupingFields = "cDNA_ID")
Arguments
seuratObj
The Seurat object to append clone properties to
tcrClonesFile
The 10x clonotypes file for this Seurat object. Single lanes can use the CellRanger/Vloupe contigs CSV file. Merged lanes need to merge these files and modify them to create unique cellbarcodes and clonotype names, such as the code from Rdiscvr::CreateMergedTcrClonotypeFile().
groupingFields
A list of fields used to group cells by sample, which establishes librarySize
bimberlabinternal/CellMembrane documentation built on Nov. 15, 2024, 9:34 p.m.
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| QuantifyTcrClones | R Documentation |
Append Clone Properties
Description
A function to append clone properties to a Seurat object
Usage
QuantifyTcrClones(seuratObj, tcrClonesFile, groupingFields = "cDNA_ID")
Arguments
seuratObj |
The Seurat object to append clone properties to |
tcrClonesFile |
The 10x clonotypes file for this Seurat object. Single lanes can use the CellRanger/Vloupe contigs CSV file. Merged lanes need to merge these files and modify them to create unique cellbarcodes and clonotype names, such as the code from Rdiscvr::CreateMergedTcrClonotypeFile(). |
groupingFields |
A list of fields used to group cells by sample, which establishes librarySize |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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