QuantifyTcrClones | R Documentation |
A function to append clone properties to a Seurat object
QuantifyTcrClones(seuratObj, tcrClonesFile, groupingFields = "cDNA_ID")
seuratObj |
The Seurat object to append clone properties to |
tcrClonesFile |
The 10x clonotypes file for this Seurat object. Single lanes can use the CellRanger/Vloupe contigs CSV file. Merged lanes need to merge these files and modify them to create unique cellbarcodes and clonotype names, such as the code from Rdiscvr::CreateMergedTcrClonotypeFile(). |
groupingFields |
A list of fields used to group cells by sample, which establishes librarySize |
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