RLE_Plot: RLE_Plot

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

RLE_Plot

Description

a function to compute relative log expression plots to qualitatively test whether or not a normalization successfully normalized the data.

Usage

RLE_Plot(
  seuratObj,
  assay = "RNA",
  sampleIdentifier = "SegmentDisplayName",
  colorVariable
)

Arguments

seuratObj	The Seurat object that holds the data to be normalized.
assay	The assay holding the raw data - the counts slot will be assumed to hold raw data.
sampleIdentifier	The metadata column that defines individual samples.
colorVariable	The metadata column that determines the color of the boxplots of RLE. Optimally, this should be some type of phenotypic description.

Value

Returns a relative log expression plot

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.