RLE_Plot | R Documentation |
a function to compute relative log expression plots to qualitatively test whether or not a normalization successfully normalized the data.
RLE_Plot(
seuratObj,
assay = "RNA",
sampleIdentifier = "SegmentDisplayName",
colorVariable
)
seuratObj |
The Seurat object that holds the data to be normalized. |
assay |
The assay holding the raw data - the counts slot will be assumed to hold raw data. |
sampleIdentifier |
The metadata column that defines individual samples. |
colorVariable |
The metadata column that determines the color of the boxplots of RLE. Optimally, this should be some type of phenotypic description. |
Returns a relative log expression plot
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