RunDecoupleR: Run decoupleR
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
RunDecoupleR R Documentation
Run decoupleR
Description
This will run decoupleR to infer TF
Usage
RunDecoupleR(
seuratObj,
sourceAssay = "RNA",
targetAssay = "tfsulm",
organism = "human"
)
Arguments
seuratObj
A Seurat object.
sourceAssay
The source assay
targetAssay
The target assay to store results
organism
Passed directly to decoupleR::get_collectri()
Value
The seurat object
bimberlabinternal/CellMembrane documentation built on Jan. 16, 2025, 5:47 p.m.
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| RunDecoupleR | R Documentation |
Run decoupleR
Description
This will run decoupleR to infer TF
Usage
RunDecoupleR(
seuratObj,
sourceAssay = "RNA",
targetAssay = "tfsulm",
organism = "human"
)
Arguments
seuratObj |
A Seurat object. |
sourceAssay |
The source assay |
targetAssay |
The target assay to store results |
organism |
Passed directly to decoupleR::get_collectri() |
Value
The seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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