RunUmapOnSDA: Run UMAP using SDA results
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
RunUmapOnSDA R Documentation
Run UMAP using SDA results
Description
Run UMAP using SDA results
Usage
RunUmapOnSDA(
seuratObj,
dimsToUse = NULL,
minDimsToUse = NULL,
reduction = "sda"
)
Arguments
seuratObj
A Seurat object.
dimsToUse
The number of dims to use. If null, this will be inferred using FindSeuratElbow()
minDimsToUse
The minimum numbers of dims to use. If dimsToUse is provided, this will override.
reduction
The name of the source reduction
Value
A modified Seurat object.
bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.
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| RunUmapOnSDA | R Documentation |
Run UMAP using SDA results
Description
Run UMAP using SDA results
Usage
RunUmapOnSDA(
seuratObj,
dimsToUse = NULL,
minDimsToUse = NULL,
reduction = "sda"
)
Arguments
seuratObj |
A Seurat object. |
dimsToUse |
The number of dims to use. If null, this will be inferred using FindSeuratElbow() |
minDimsToUse |
The minimum numbers of dims to use. If dimsToUse is provided, this will override. |
reduction |
The name of the source reduction |
Value
A modified Seurat object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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