SDA_GO_Enrichment: Compute and score GO enrichment for SDA components

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

Compute and score GO enrichment for SDA components

Description

Compute and score GO enrichment for SDA components

Usage

SDA_GO_Enrichment(
  sdaResults,
  components,
  orgDb = "org.Hs.eg.db",
  geneNumber = 100,
  direction = "Both"
)

Arguments

sdaResults	The result list generated by SDATools
components	A vector of SDA components to inspect
orgDb	The Bioconductor OrgDb (string), which is passed directed to clusterProfiler::enrichGO()
geneNumber	The number of genes to inspect
direction	Whether to include positive genes, negative, or both

Value

A list mapping component name + direction to the enrichGO results

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.