SDA_GO_Enrichment: Compute and score GO enrichment for SDA components

View source: R/SDA.R

SDA_GO_EnrichmentR Documentation

Compute and score GO enrichment for SDA components

Description

Compute and score GO enrichment for SDA components

Usage

SDA_GO_Enrichment(
  sdaResults,
  components,
  orgDb = "org.Hs.eg.db",
  geneNumber = 100,
  direction = "Both"
)

Arguments

sdaResults

The result list generated by SDATools

components

A vector of SDA components to inspect

orgDb

The Bioconductor OrgDb (string), which is passed directed to clusterProfiler::enrichGO()

geneNumber

The number of genes to inspect

direction

Whether to include positive genes, negative, or both

Value

A list mapping component name + direction to the enrichGO results


bimberlabinternal/CellMembrane documentation built on Dec. 25, 2024, 8:10 a.m.