ScoreCellCycle: Score Cell Cycle

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

Score Cell Cycle

Description

Score Cell Cycle

Usage

ScoreCellCycle(seuratObj, min.genes = 10, useAlternateG2M = FALSE)

Arguments

seuratObj	The seurat object
min.genes	If less than min.genes are shared between the seurat object and the reference cell cycle genes, this method will abort.
useAlternateG2M	If true, this will use a smaller set of G2M genes, defined from: https://raw.githubusercontent.com/hbc/tinyatlas/master/cell_cycle/Homo_sapiens.csv

Value

A modified Seurat object.

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.