autoRunFromSettings: Automatically run set of analyses from a set of loaded...

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

Function searches for settings objects in the STUDY-studyMetaData-settings slot, then automatically executes the analysis for each arm described by the settings.

Usage

autoRunFromSettings(study, verbose = T)

Arguments

study	A Study object with settings available.
verbose	A flag indicating if analyses should be run in interactive/verbose mode, prompting user to check intermediate settings.

Value

A Study object with analysis described by settings complete.

Examples

#load a set of settings
abacavirSettings = getBasicSettings()

#initialize the study

s1 = getStudyObject(path_detail=getDefaultPaths(), 
									settings=abacavirSettings,
									study.name="integrationTestAvacavirMetabolism")
s1 = loadBasicArms(STUDY=s1)
sres = autoRunFromSettings(study=s1)

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.