hypergeometricPathEnrichment: hypergeometric Path Enrichment analysis function for...

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

Provides hypergeometric test for analysis of pathway enrichment. Implements interface from the summaryTable function to path significance tests.

Usage

hypergeometricPathEnrichment(pathSigRunner, paths_detail)

Arguments

pathSigRunner	An object of the PathSummaryRunner reference class
paths_detail	An object of the Path_Detail class

Value

data.frame with two columns, one with hypergeometric p-values for each path, the other with B.Y./FDR adjusted p-value.

Note

Implements the path test interface with one input, the path summary list, and the output, a data.frame with pathway names as row name(s) and named column(s) giving the result of the significance test.

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.