loadBasicArms: Load the basic set of analysis arms for use in a study

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

This function connects the basic set of analysis arms (drug screen analysis, somatic mutation, arbitrary gene input data and overlap analysis) to a Study object.

Usage

loadBasicArms(STUDY)

Arguments

STUDY

A Study object.

Value

A Study object with study arms loaded.

Examples

study = getStudyObject(study.name="testDataSets", 
											 geneIdentifierType="HUGO")
study = loadBasicArms(STUDY=study) 
sa = slot(object=study, name="arms")
print(names(sa))
print(slotNames(sa$functional_drug_screen_summary))

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.