extractPathNames: Get names of significant pathways.

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

Extracts path names given a results set name, study and limitCol

Usage

extractPathNames(resSetName, study, limitCol, limitVal, verbose = TRUE)

Arguments

resSetName	the name of a summary table results set
study	a study object
limitCol	the column the returned pathways should be limited by
limitVal	the value in the limitCol the returned pathways should be limited to.
verbose	Flag to control if prompt should be given to limit pathways returned to only those with less than 600 genes.

Value

vector, a list of pathways from study meeting the parameters described in the function argument.

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.