getDefaultPaths: Retreive the default set of cellular pathways.
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
Description
Usage
Arguments
Value
Examples
View source: R/pathway_functions.R
Description
Retreives the default set of cellular pathways. These are the gene sets for all Reactome pathways as downloaded on 4/6/14 .
Usage
1
2
getDefaultPaths(path_file = system.file("extdata/Reactome.2014.04.06.12.52.27.txt",
package = "packageDir"))
Arguments
path_file
string giving the relative or absolute file path to an accessible set of cellular pathways. Set of pathways must first have been recorded in the reference_data/paths/pathMetaData.txt file.
Value
A Path_Detail object.
Examples
1
cellularPathwayGeneSets = getDefaultPaths()
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
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Description Usage Arguments Value Examples
View source: R/pathway_functions.R
Description
Retreives the default set of cellular pathways. These are the gene sets for all Reactome pathways as downloaded on 4/6/14 .
Usage
1 2 | getDefaultPaths(path_file = system.file("extdata/Reactome.2014.04.06.12.52.27.txt",
package = "packageDir"))
|
Arguments
path_file |
string giving the relative or absolute file path to an accessible set of cellular pathways. Set of pathways must first have been recorded in the reference_data/paths/pathMetaData.txt file. |
Value
A Path_Detail object.
Examples
1 | cellularPathwayGeneSets = getDefaultPaths()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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