getPathsWithGenes: Get the names of the pathways containing submitted genes.
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
Description
Usage
Arguments
Value
Examples
View source: R/pathway_functions.R
Description
Given a vector of gene identifiers, this function will return a two column matrix: the gene ids and a column indicating which, if any pathways each gene belongs to.
Usage
1
getPathsWithGenes(genevector, path_detail)
Arguments
genevector
A character vector of gene identifiers
path_detail
A Path_Detail object.
Value
A two column data.frame, with columns "gene" and "path_membership"
Examples
1
2
path_detail = getDefaultPaths()
res = getPathsWithGenes(genevector=c("FAT1","TP53","ENAH","HOMER3"), path_detail=path_detail)
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/pathway_functions.R
Description
Given a vector of gene identifiers, this function will return a two column matrix: the gene ids and a column indicating which, if any pathways each gene belongs to.
Usage
1 | getPathsWithGenes(genevector, path_detail)
|
Arguments
genevector |
A character vector of gene identifiers |
path_detail |
A |
Value
A two column data.frame, with columns "gene" and "path_membership"
Examples
1 2 | path_detail = getDefaultPaths()
res = getPathsWithGenes(genevector=c("FAT1","TP53","ENAH","HOMER3"), path_detail=path_detail)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.