importAllGraphite: Import all pathway repositories from the graphite package to...
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
View source: R/pathway_functions.R
Description
Gives options to import pathway repositories from Reactome, Spike, NCI, KEGG and Biocarta.
Usage
1
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importAllGraphite(repositories = list(reactome = reactome, spike = spike,
nci = nci, kegg = kegg, biocarta = biocarta), symtab = NULL,
verbose = F)
Arguments
repositories
A list object, each slot containing a pathway repository from graphite that is to be imported
symtab
A HUGO symbol look up table, as provided by the package HGNChelper or from genenames.org.
verbose
A flag indicating if this function should be run in an interactive mode. This allows individual pathway repositories to be selected, insted of automatically selecting all pathways.
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
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View source: R/pathway_functions.R
Description
Gives options to import pathway repositories from Reactome, Spike, NCI, KEGG and Biocarta.
Usage
1 2 3 | importAllGraphite(repositories = list(reactome = reactome, spike = spike,
nci = nci, kegg = kegg, biocarta = biocarta), symtab = NULL,
verbose = F)
|
Arguments
repositories |
A |
symtab |
A HUGO symbol look up table, as provided by the package HGNChelper or from genenames.org. |
verbose |
A flag indicating if this function should be run in an interactive mode. This allows individual pathway repositories to be selected, insted of automatically selecting all pathways. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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