coreOverlapAnalysis: The central function used in an overlap analysis
In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.
Description
Usage
Arguments
Value
View source: R/OverlapAnalysisFunctions.R
Description
Examines the actual overlap between functionally significant and aberrationally signficant pathways.
Usage
1
2
coreOverlapAnalysis(functionalEnrichmentAnalysis, combinedAberrations, ola,
coverage = NULL)
Arguments
functionalEnrichmentAnalysis
The functional enrichment analysis to be used.
combinedAberrations
The aberration analysis to be used
ola
The overlap analysis runner object to be used.
coverage
If coverage is limited, this will contain the set of genes the coverage is limited to.
Value
An overlap analysis
biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.
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Description Usage Arguments Value
View source: R/OverlapAnalysisFunctions.R
Description
Examines the actual overlap between functionally significant and aberrationally signficant pathways.
Usage
1 2 | coreOverlapAnalysis(functionalEnrichmentAnalysis, combinedAberrations, ola,
coverage = NULL)
|
Arguments
functionalEnrichmentAnalysis |
The functional enrichment analysis to be used. |
combinedAberrations |
The aberration analysis to be used |
ola |
The overlap analysis runner object to be used. |
coverage |
If coverage is limited, this will contain the set of genes the coverage is limited to. |
Value
An overlap analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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