addCohortToIndividuals: Adds path enrichment information from cohort to paths found...

In biodev/packageDir: Tool for in silico functional analysis design and exploration of relation between genomic function and aberration.

Description

Adds the columns in columnsToAdd from the whole cohort path enrichment to the path enrichments for each patient.

Usage

addCohortToIndividuals(res, columnsToAdd = grep(pattern = "hyper",
  colnames(res$pathsummary))[1]:ncol(res$pathsummary))

Arguments

res	The results list object containing slots named path_summar y_each_patient and pathsummary.
columnsToAdd	The columns from mainPathSum to add to each individual patient path summary

Value

The list of path summary results for each patient.

Examples

tstudy = getTestStudyObject()
all_results = slot(object=tstudy, name="results")
psep = addCohortToIndividuals(res=all_results$somatic_mutation_aberration_summary)
## Not run: 
View(psep$p1$pathsummary)

## End(Not run)

biodev/packageDir documentation built on Nov. 4, 2019, 7:19 a.m.