SegmentParam-class: A class for storing segmentation parameters

In cancer-genomics/trellis: Somatic structural variant analysis

A class for storing segmentation parameters

Description

A class for storing segmentation parameters

A parameters class for segmentation by DNAcopy

Usage

cbs_alpha(x)

undo.splits(x)

undo.SD(x)

SegmentParam(alpha = 0.001, undo.splits = "sdundo", undo.SD = 2, verbose = 0)

## S4 method for signature 'SegmentParam'
cbs_alpha(x)

## S4 method for signature 'SegmentParam'
undo.splits(x)

## S4 method for signature 'SegmentParam'
undo.SD(x)

Arguments

x	SegmentParam object
alpha	a length-one numeric vector
undo.splits	character string
undo.SD	length-one numeric vector
verbose	length-one numeric vector

Value

SegmentParam object

Slots

alpha

A length-one numeric vector

undo.splits

A length-one character vector

undo.SD

A length-one numeric vector

verbose

A length-one numeric vector

See Also

segment

A description for each of these argments can be found by reading the documentation for the segment function in the DNAcopy package.

Examples

sp <- SegmentParam()
cbs_alpha(sp)
undo.splits(sp)
undo.SD(sp)

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.