Transcripts-class: Container for storing CDS near a sequence junction

In cancer-genomics/trellis: Somatic structural variant analysis

Container for storing CDS near a sequence junction

Description

Container for storing CDS near a sequence junction

Usage

identifier(object)

Transcripts(
  tA = GRangesList(),
  tB = GRangesList(),
  tC = GRangesList(),
  tD = GRangesList(),
  id = character()
)

## S4 method for signature 'Transcripts'
identifier(object)

## S4 replacement method for signature 'Transcripts'
identifier(object) <- value

## S4 method for signature 'Transcripts,ANY,ANY'
x[[i, j, ..., drop = FALSE]]

## S4 replacement method for signature 'Transcripts,ANY,ANY,GRangesList'
x[[i, j]] <- value

Arguments

x	a Transcripts object
i	integer vector
j	integer vector
...	ignored
drop	ignored

Slots

tA

a GRangesList

tB

a GRangesList

tC

a GRangesList

tD

a GRangesList

id

sample id

Examples

Transcripts()

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.