TranscriptsFusion-class: A container for fused transcripts

In cancer-genomics/trellis: Somatic structural variant analysis

A container for fused transcripts

Description

Container for fused transcripts.

Usage

fusions(object)

fusions(object) <- value

fusionNames(object)

identifier(object) <- value

numberFusions(object)

TranscriptsFusion(object, fusions = list())

## S4 method for signature 'ClippedTranscripts'
names(x)

## S4 method for signature 'TranscriptsFusion'
fusions(object)

## S4 replacement method for signature 'TranscriptsFusion,list'
fusions(object) <- value

## S4 method for signature 'TranscriptsFusion'
fusionNames(object)

## S4 method for signature 'TranscriptsFusion'
numberFusions(object)

## S4 method for signature 'TranscriptsFusion,ExonSubset,ANY,ANY'
x[i, j, ..., drop = FALSE]

Arguments

value	character string
x	a TranscriptsFusion object
i	an integer-vector
j	ignored
...	ignored
drop	ignored

Value

a ClippedTranscripts object

Slots

fusions

a list of fusions

Examples

TranscriptsFusion()

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.