fractionLinkingTags: The fraction of improper read pairs that link two clusters of...

In cancer-genomics/trellis: Somatic structural variant analysis

The fraction of improper read pairs that link two clusters of improper reads

Description

For bona fide deletions, inversions, and translocations, we would expect that the fraction of improper read pairs that link two clusters of improper reads to be high. For amplicons, the fraction of reads linking two clusters may be small.

Usage

fractionLinkingTags(object)

fractionLinkingTags(object) <- value

## S4 method for signature 'Rearrangement'
fractionLinkingTags(object)

## S4 replacement method for signature 'Rearrangement'
fractionLinkingTags(object) <- value

## S4 method for signature 'RearrangementList'
fractionLinkingTags(object)

Arguments

object	a Rearrangement object
value	length-one numeric vector

Value

numeric

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.