fuseCDS_Rlist: Extract the CDS involved in each rearrangement of a...
In cancer-genomics/trellis: Somatic structural variant analysis
fuseCDS_Rlist R Documentation
Extract the CDS involved in each rearrangement of a RearrangementList object
Description
Extract for each rearrangement the full CDS of the fused sequence in the somatic genome (fusions), the partial CDS of the 5-prime (tum.5p) and 3-prime (tum.3p) transcripts that are involved in the fusion, and the full CDS of the 5-prime (ref.5p) and 3-prime transcripts in the reference genome.
Usage
fuseCDS_Rlist(rlist, jxns)
Arguments
rlist
a RearrangementList
jxns
a GRanges specifying the 5-prime and 3-prime genomic regions that form a new sequence junction
Value
a List of the CDS
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| fuseCDS_Rlist | R Documentation |
Extract the CDS involved in each rearrangement of a RearrangementList object
Description
Extract for each rearrangement the full CDS of the fused sequence in the somatic genome (fusions), the partial CDS of the 5-prime (tum.5p) and 3-prime (tum.3p) transcripts that are involved in the fusion, and the full CDS of the 5-prime (ref.5p) and 3-prime transcripts in the reference genome.
Usage
fuseCDS_Rlist(rlist, jxns)
Arguments
rlist |
a |
jxns |
a |
Value
a List of the CDS
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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