View source: R/rearrangement-utils.R
ggRearrange | R Documentation |
ggplot wrapper for plotting reads supporting a rearrangement
ggRearrange(df, ylab = "Read pair index", basepairs = 400, num.ticks = 5)
df |
a |
ylab |
y-axis label |
basepairs |
integer specifying size of window in basepairs |
num.ticks |
integer specifying number of x-axis ticks |
rearDataFrame
data(rlist) extdata <- system.file("extdata", package="svbams") unmap.file <- file.path(extdata, "blat_unmapped.txt") blat_unmap <- readBlat(unmap.file) split_reads <- rearrangedReads(linkedBins(rlist), blat_unmap, 500) splitReads(rlist) <- split_reads rlist2 <- fiveTo3List(rlist, build="hg19") r <- rlist2[[1]] df <- rearDataFrame(r, "hg19") ## Not run: ggRearrange(df) ## End(Not run)
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