granges_copynumber: Compute the mean normalized read-depth for a set of intervals
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/Preprocess-class.R
granges_copynumber R Documentation
Compute the mean normalized read-depth for a set of intervals
Description
Calculates the mean normalized read-depth for a set of genomic
intervals in a GRanges object.
Usage
granges_copynumber(gr, pviews)
Arguments
gr
a GRanges object
pviews
a PreprocessViews2 object
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/Preprocess-class.R
| granges_copynumber | R Documentation |
Compute the mean normalized read-depth for a set of intervals
Description
Calculates the mean normalized read-depth for a set of genomic
intervals in a GRanges object.
Usage
granges_copynumber(gr, pviews)
Arguments
gr |
a |
pviews |
a |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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