isComplex: Ad-hoc assessment of the complexity of a rearrangement using...
In cancer-genomics/trellis: Somatic structural variant analysis
isComplex R Documentation
Ad-hoc assessment of the complexity of a rearrangement using the strand of the supporting read pairs
Description
For most rearrangements, the strand of the 5-prime and 3-prime reads belonging to a rearranged read pair will be consistent. For example, all rearranged read pairs are +/-, indicating a fusion on the positive strand (R1+, R2-) or negative strand (R1-, R2+).
Usage
isComplex(x)
Arguments
x
a Rearrangement or RearrangementList
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| isComplex | R Documentation |
Ad-hoc assessment of the complexity of a rearrangement using the strand of the supporting read pairs
Description
For most rearrangements, the strand of the 5-prime and 3-prime reads belonging to a rearranged read pair will be consistent. For example, all rearranged read pairs are +/-, indicating a fusion on the positive strand (R1+, R2-) or negative strand (R1-, R2+).
Usage
isComplex(x)
Arguments
x |
a |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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