listDeletions: Extract a GRangesList of all identified deletions in a...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/deletion-utils.R
listDeletions R Documentation
Extract a GRangesList of all identified deletions in a project
Description
Deletions are assumed by be saved in a deletion directory by the name of
the BAM file.
Usage
listDeletions(path = "data/segment/1deletions", ids)
Arguments
path
character string providing directory where deletions are saved
ids
a character vector of sample identifiers
Value
a GRangesList of deletions
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/deletion-utils.R
| listDeletions | R Documentation |
Extract a GRangesList of all identified deletions in a project
Description
Deletions are assumed by be saved in a deletion directory by the name of the BAM file.
Usage
listDeletions(path = "data/segment/1deletions", ids)
Arguments
path |
character string providing directory where deletions are saved |
ids |
a character vector of sample identifiers |
Value
a GRangesList of deletions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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